Description Objects from the Class Slots Methods Author(s) References Examples
The geneSignature object contains the necessary elements defining the signaling environment on which a prognostic gene signature will be created.
Objects can be created by calls of the form new("geneSignature", ...)
.
Objects all contain 4 slots - geneSet, geneDirect, thresholds, dirMat (unused).
geneSet
:Object of class "character"
~~
geneDirect
:Object of class "numeric"
~~
thresholds
:Object of class "numeric"
~~
dirMat
:Object of class "matrix"
~~
signature(dataSet = "ExpressionSet", geneSig = "geneSignature")
: ...
signature(dataSet = "ExpressionSet", geneSig = "geneSignature")
: ...
signature(dataSet = "matrix", geneSig = "geneSignature")
: ...
signature(g = "geneSignature")
: ...
signature(g = "geneSignature")
: ...
signature(g = "geneSignature")
: ...
signature(g = "geneSignature")
: ...
signature(g = "geneSignature", direct = "numeric")
: ...
signature(g = "geneSignature")
: ...
signature(g = "geneSignature")
: ...
signature(g = "geneSignature")
: ...
UnJin lee
Lee U, Frankenberger C, Yun J, Bevilacqua E, Caldas C, et al. (2013) A Prognostic Gene Signature for Metastasis-Free Survival of Triple Negative Breast Cancer Patients. PLoS ONE 8(12): e82125. doi:10.1371/journal.pone.0082125
1 | showClass("geneSignature")
|
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