Man pages for sincell
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
| ExpressionMatrix | Single-cell expression data for genes differentially... |
| f_distance2vector | Conversion of the lower triangular matrix of a distance... |
| geneset.list | Example of a geneset collection |
| knnalgorithm | Auxiliary function for KNN and IMC algorithms |
| pseudoreplicatesbymodel | Auxiliary function of sc_InSilicoCellsReplicatesObj function... |
| pseudoreplicatesbynoise | Auxiliary function of sc_InSilicoCellsReplicatesObj function... |
| pseudoreplicatesbynoise_cv2 | Auxiliary function of sc_InSilicoCellsReplicatesObj function... |
| sc_AssociationOfCellsHierarchyWithAGeneSet | Association of a cell-state hierarchy with a functional gene... |
| sc_clusterObj | Clustering of individual cells based on a metric of choice |
| sc_ComparissonOfGraphs | Comparisson of graphs |
| sc_DimensionalityReductionObj | Dimensionality reduction of an expression matrix |
| sc_distanceObj | Assessment of a cell-to-cell distance matrix with a metric of... |
| sc_GraphBuilderObj | Graph building function for assessment of cell-state... |
| sc_InitializingSincellObject | Function to initialize a sincell object |
| sc_InSilicoCellsReplicatesObj | In silico generation of replicates of individual cells |
| sc_marker2color | Palette of colors from the expression values of a marker gene |
| sc_StatisticalSupportByGeneSubsampling | Statistical support of cell-state hierarchies by gene... |
| sc_StatisticalSupportByReplacementWithInSilicoCellsReplicates | Statistical support of cell-state hierarchies by random cell... |
| sstalgorithm | Auxiliary function for SST algorithm within function... |
