pseudoreplicatesbymodel: Auxiliary function of sc_InSilicoCellsReplicatesObj function...

In sincell: R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data

Description

Auxiliary function implemented in C++ making part of the sc_InSilicoCellsReplicatesObj function

Usage

pseudoreplicatesbymodel(rows, colums, alpha, vargenes, meangenes, positive, f, seed)

Arguments

rows	number of rows in list "expressionmatrix" within Sincell object
colums	number of colums in list "expressionmatrix" within Sincell object
alpha	Vector containing for each gene in "expressionmatrix" the proportion of cells where expression was detected above a given threshold level (parameter "no_expr" in function sc_InSilicoCellsReplicatesObj() )
vargenes	Vector containing for each gene in "expressionmatrix" the variance of the expression levels in those cells where expression was detected above a given threshold level (parameter "no_expr" in function sc_InSilicoCellsReplicatesObj() )
meangenes	Vector containing for each gene in "expressionmatrix" the average of the expression levels in those cells where expression was detected above a given threshold level (parameter "no_expr" in function sc_InSilicoCellsReplicatesObj() )
positive	Force the new matrix to be positive. 1 for TRUE, 0 for FALSE
f	R function rnorm
seed	seed integer for random generation

Value

A numeric matrix is returned as described in sc_InSilicoCellsReplicatesObj when method="lognormal-3parameters"

See Also

sc_InSilicoCellsReplicatesObj()

sincell documentation built on Nov. 8, 2020, 5:58 p.m.