slalom: Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

slalom is a scalable modelling framework for single-cell RNA-seq data that uses gene set annotations to dissect single-cell transcriptome heterogeneity, thereby allowing to identify biological drivers of cell-to-cell variability and model confounding factors.

Package details

AuthorFlorian Buettner [aut], Naruemon Pratanwanich [aut], Davis McCarthy [aut, cre], John Marioni [aut], Oliver Stegle [aut]
Bioconductor views DimensionReduction GeneExpression ImmunoOncology Normalization RNASeq Reactome Sequencing SingleCell Software Transcriptomics Visualization
MaintainerDavis McCarthy <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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slalom documentation built on Nov. 8, 2020, 5:24 p.m.