spade: SPADE -- An analysis and visualization tool for Flow Cytometry

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

AuthorM. Linderman, P. Qiu, E. Simonds, Z. Bjornson
Date of publicationNone
MaintainerZach Bjornson <bjornson@stanford.edu>
LicenseGPL-2
Version1.20.0
http://cytospade.org

View on Bioconductor

Files

spade/DESCRIPTION
spade/LICENSE
spade/NAMESPACE
spade/R
spade/R/annotation.R
spade/R/autoAssign.R
spade/R/cluster.R
spade/R/downsample.R
spade/R/driver.R
spade/R/fcs.R
spade/R/upsample.R
spade/R/zzz.R
spade/README.md
spade/build
spade/build/vignette.rds
spade/cleanup
spade/configure
spade/configure.ac
spade/inst
spade/inst/doc
spade/inst/doc/SPADE.R
spade/inst/doc/SPADE.Rnw
spade/inst/doc/SPADE.pdf
spade/inst/extdata
spade/inst/extdata/SimulatedRawData.fcs
spade/inst/tools
spade/inst/tools/CytoSPADE.jar
spade/inst/tools/organize_fold_pdfs.sh
spade/inst/tools/organize_median_pdfs.sh
spade/inst/tools/runSPADE.R
spade/m4
spade/m4/ac_openmp.m4
spade/man
spade/man/SPADE.FCSToTree.Rd spade/man/SPADE.addClusterToFCS.Rd spade/man/SPADE.addDensityToFCS.Rd spade/man/SPADE.annotateGraph.Rd spade/man/SPADE.downsampleFCS.Rd spade/man/SPADE.driver.Rd spade/man/SPADE.flattenAnnotations.Rd spade/man/SPADE.installPlugin.Rd spade/man/SPADE.layout.arch.Rd spade/man/SPADE.markerMedians.Rd spade/man/SPADE.plot.trees.Rd spade/man/SPADE.read.FCS.Rd spade/man/SPADE.write.graph.Rd
spade/src
spade/src/Makevars
spade/src/Makevars.in
spade/src/Makevars.win
spade/src/cluster.cc
spade/src/downsample.cc
spade/src/spade.cc
spade/src/upsample.cc
spade/src/util.h
spade/vignettes
spade/vignettes/SPADE.Rnw
spade/vignettes/cytospade.png
spade/vignettes/science-tree-cd34.png
spade/vignettes/spaderef.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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