Files in spliceSites
A bioconductor package for exploration of alignment gap positions from RNA-seq data
NEWS
DESCRIPTION
NAMESPACE
ChangeLog
inst/doc/spliceSites.pdf
inst/doc/spliceSites.R
inst/doc/spliceSites.Rnw
inst/extdata/dna_small.RData
inst/extdata/rna_fem.bam.bai
inst/extdata/uc_small.RData
inst/extdata/rna_fem.bam
inst/extdata/maxent.RData
inst/extdata/rna_mal.bam
inst/extdata/rna_mal.bam.bai
inst/extdata/hbs.RData
inst/extdata/key.RData
inst/extdata/uc_small_junc.RData
inst/extdata/ens_small.RData
inst/extdata/cuff_files/5.genes.fpkm_tracking
inst/extdata/cuff_files/7.genes.fpkm_tracking
inst/extdata/cuff_files/3.genes.fpkm_tracking
inst/extdata/cuff_files/2.genes.fpkm_tracking
inst/extdata/cuff_files/groups.csv
inst/extdata/cuff_files/4.genes.fpkm_tracking
inst/extdata/cuff_files/8.genes.fpkm_tracking
inst/extdata/cuff_files/10.genes.fpkm_tracking
inst/extdata/cuff_files/1.genes.fpkm_tracking
inst/extdata/cuff_files/9.genes.fpkm_tracking
inst/extdata/cuff_files/6.genes.fpkm_tracking
vignettes/spliceSites.bib
vignettes/spliceSites.Rnw
R/head-methods.R
R/allGenerics.R
R/dim-methods.R
R/spliceSites.R
R/allClasses.R
R/c-methods.R
R/show-methods.R
src/spliceSites.c
src/alpha_idx.h
src/Makevars.win
src/spliceSites.h
src/Makevars
man/maxEnt-class.Rd
man/readCuffGeneFpkm.Rd
man/addMaxEnt.Rd
man/sortTable-methods.Rd
man/truncate_seq.Rd
man/addHbond.Rd
man/aaGapSites-class.Rd
man/truncateSeq.Rd
man/merge-methods.Rd
man/dnaRanges.Rd
man/write.files.Rd
man/caRanges-class.Rd
man/addGenomeData-ExpressionSet.Rd
man/uniqueJuncAnn.Rd
man/seqlogo.Rd
man/addGenomeData-gapSites.Rd
man/readTabledBamGaps.Rd
man/xCodons.Rd
man/head-methods.Rd
man/extractByGeneName.Rd
man/z[-methods.Rd
man/dnaGapSites-class.Rd
man/as.data.frame-methods.Rd
man/extractRange.Rd
man/gapSites-class.Rd
man/trypsinCleave.Rd
man/plotGeneAlignDepth.Rd
man/annotation.Rd
man/readMergedBamGaps.Rd
man/getGapSites.Rd
man/annGapSites-class.Rd
man/gapSites.Rd
man/spliceSites-package.Rd
man/silic_tryp.Rd
man/hbond-class.Rd
man/cRanges-class.Rd
man/readExpSet.Rd
man/rangeByGeneName.Rd
man/xJuncStrand.Rd
man/cdRanges-class.Rd
man/lrCodons.Rd
man/annotate-ExpressionSet.Rd
man/initialize-methods.Rd
man/keyProfiler-class.Rd
man/countByGeneName.Rd
man/c-methods.Rd
man/addGeneAligns.Rd
man/alt_X_ranks.Rd
man/trim.Rd
man/SpliceCountSet-class.Rd
man/dim-methods.Rd
man/xJunc.Rd
build/vignette.rds
