Files in spliceSites
A bioconductor package for exploration of alignment gap positions from RNA-seq data

NEWS
DESCRIPTION
NAMESPACE
ChangeLog
inst/doc/spliceSites.pdf inst/doc/spliceSites.R
inst/doc/spliceSites.Rnw
inst/extdata/dna_small.RData
inst/extdata/rna_fem.bam.bai
inst/extdata/uc_small.RData
inst/extdata/rna_fem.bam
inst/extdata/maxent.RData
inst/extdata/rna_mal.bam
inst/extdata/rna_mal.bam.bai
inst/extdata/hbs.RData
inst/extdata/key.RData
inst/extdata/uc_small_junc.RData
inst/extdata/ens_small.RData
inst/extdata/cuff_files/5.genes.fpkm_tracking
inst/extdata/cuff_files/7.genes.fpkm_tracking
inst/extdata/cuff_files/3.genes.fpkm_tracking
inst/extdata/cuff_files/2.genes.fpkm_tracking
inst/extdata/cuff_files/groups.csv
inst/extdata/cuff_files/4.genes.fpkm_tracking
inst/extdata/cuff_files/8.genes.fpkm_tracking
inst/extdata/cuff_files/10.genes.fpkm_tracking
inst/extdata/cuff_files/1.genes.fpkm_tracking
inst/extdata/cuff_files/9.genes.fpkm_tracking
inst/extdata/cuff_files/6.genes.fpkm_tracking
vignettes/spliceSites.bib
vignettes/spliceSites.Rnw
R/head-methods.R R/allGenerics.R R/dim-methods.R R/spliceSites.R R/allClasses.R R/c-methods.R R/show-methods.R
src/spliceSites.c
src/alpha_idx.h
src/Makevars.win
src/spliceSites.h
src/Makevars
man/maxEnt-class.Rd man/readCuffGeneFpkm.Rd man/addMaxEnt.Rd man/sortTable-methods.Rd man/truncate_seq.Rd man/addHbond.Rd man/aaGapSites-class.Rd man/truncateSeq.Rd man/merge-methods.Rd man/dnaRanges.Rd man/write.files.Rd man/caRanges-class.Rd man/addGenomeData-ExpressionSet.Rd man/uniqueJuncAnn.Rd man/seqlogo.Rd man/addGenomeData-gapSites.Rd man/readTabledBamGaps.Rd man/xCodons.Rd man/head-methods.Rd man/extractByGeneName.Rd man/z[-methods.Rd man/dnaGapSites-class.Rd man/as.data.frame-methods.Rd man/extractRange.Rd man/gapSites-class.Rd man/trypsinCleave.Rd man/plotGeneAlignDepth.Rd man/annotation.Rd man/readMergedBamGaps.Rd man/getGapSites.Rd man/annGapSites-class.Rd man/gapSites.Rd man/spliceSites-package.Rd man/silic_tryp.Rd man/hbond-class.Rd man/cRanges-class.Rd man/readExpSet.Rd man/rangeByGeneName.Rd man/xJuncStrand.Rd man/cdRanges-class.Rd man/lrCodons.Rd man/annotate-ExpressionSet.Rd man/initialize-methods.Rd man/keyProfiler-class.Rd man/countByGeneName.Rd man/c-methods.Rd man/addGeneAligns.Rd man/alt_X_ranks.Rd man/trim.Rd man/SpliceCountSet-class.Rd man/dim-methods.Rd man/xJunc.Rd
build/vignette.rds
spliceSites documentation built on Nov. 1, 2018, 2:27 a.m.