Man pages for stageR
stageR: stage-wise analysis of high throughput gene expression data in R
| adjustedAlphaLevel | Get adjusted significance level from the screening stage. |
| esetProstate | Transcript-level abundance estimates in 14 Chinese prostate... |
| getAdjustedPValues | Retrieve the stage-wise adjusted p-values. |
| getAlpha | Retrieve the significance level for the stage-wise... |
| getMethod | Retrieve FWER correction method. |
| getPConfirmation | Return unadjusted confirmation hypothesis p-values from a... |
| getPScreen | Return screening hypothesis p-values from a 'stageRClass'... |
| getResults | Get significance results according to a stage-wise analysis. |
| getSignificantGenes | Return significant genes when performing transcript-level... |
| getSignificantTx | Return significant transcripts when performing... |
| getTx2gene | Retrieve the data frame linking genes to transcripts. |
| hammer.eset | Hammer dataset |
| isAdjusted | Has stage-wise adjustment already been performed on the... |
| isPScreenAdjusted | Are the screening p-values adjusted for multiplicity? |
| stageR | Create stageR object |
| stageRClass | The stageR class |
| stageRTx | Create stageRTx object. |
| stageWiseAdjustment | adjust p-values in a two-stage analysis |
