getPScreen: Return screening hypothesis p-values from a 'stageRClass'...

In stageR: stageR: stage-wise analysis of high throughput gene expression data in R

Description

Return screening hypothesis p-values from a stageRClass object.

Usage

getPScreen(object, ...)

## S4 method for signature 'stageR'
getPScreen(object)

## S4 method for signature 'stageRTx'
getPScreen(object)

Arguments

object	an object of the stageRClass class.
...	Additional arguments

Value

A vector of screening stage (aggregated) p-values.

Methods (by class)

• stageRTx: Return screening hypothesis p-values from a stageRClass object.

Examples

pScreen=c(seq(1e-10,1e-2,length.out=100),seq(1e-2,.2,length.out=100),seq(.2,1,length.out=100))
names(pScreen)=paste0("gene",1:300)
pConfirmation=matrix(runif(900),nrow=300,ncol=3)
dimnames(pConfirmation)=list(paste0("gene",1:300),c("H1","H2","H3"))
stageRObj <- stageR(pScreen=pScreen, pConfirmation=pConfirmation)
getPScreen(stageRObj)

stageR documentation built on Nov. 8, 2020, 4:56 p.m.