stepwiseCM: Stepwise Classification of Cancer Samples using High-dimensional Data Sets

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Stepwise classification of cancer samples using multiple data sets. This package implements the classification strategy using two heterogeneous data sets without actually combining them. Package uses the data type for which full measurements are available at the first stage, and the data type for which only partial measurements are available at the second stage. For incoming new samples package quantifies how much improvement will be obtained if covariates of new samples for the data types at the second stage are measured. This packages suits for the application where study goal is not only obtain high classification accuracy, but also requires economically cheap classifier.

Author
Askar Obulkasim
Date of publication
None
Maintainer
Askar Obulkasim <askar703@gmail.com>
License
GPL (>2)
Version
1.20.0

View on Bioconductor

Man pages

Classifier
A function to perform classification task.
Classifier.par
A function to perform classification task by multi-core...
CNS
Central Nervous System (CNS) cancer data set.
Curve.generator
A function to generate accuracy curve by passing different...
Proximity
A function to calculate the proximity matrix.
RS.generator
A function to generate the reclassification score.
Step.pred
A function to generate RS cutoff point based the given...
stepwiseCM-package
Stepwise classification of cancer samples using...

Files in this package

stepwiseCM/DESCRIPTION
stepwiseCM/NAMESPACE
stepwiseCM/R
stepwiseCM/R/Classifier.R
stepwiseCM/R/Classifier.par.R
stepwiseCM/R/Curve.generator.R
stepwiseCM/R/Private.R
stepwiseCM/R/Proximity.R
stepwiseCM/R/RS.generator.R
stepwiseCM/R/Step.pred.R
stepwiseCM/build
stepwiseCM/build/vignette.rds
stepwiseCM/data
stepwiseCM/data/CNS.rda
stepwiseCM/data/datalist
stepwiseCM/inst
stepwiseCM/inst/doc
stepwiseCM/inst/doc/stepwiseCM.R
stepwiseCM/inst/doc/stepwiseCM.Rnw
stepwiseCM/inst/doc/stepwiseCM.pdf
stepwiseCM/man
stepwiseCM/man/CNS.Rd
stepwiseCM/man/Classifier.Rd
stepwiseCM/man/Classifier.par.Rd
stepwiseCM/man/Curve.generator.Rd
stepwiseCM/man/Proximity.Rd
stepwiseCM/man/RS.generator.Rd
stepwiseCM/man/Step.pred.Rd
stepwiseCM/man/stepwiseCM-package.Rd
stepwiseCM/vignettes
stepwiseCM/vignettes/stepwiseCM.Rnw