stepwiseCM: Stepwise Classification of Cancer Samples using High-dimensional Data Sets
Version 1.21.0

Stepwise classification of cancer samples using multiple data sets. This package implements the classification strategy using two heterogeneous data sets without actually combining them. Package uses the data type for which full measurements are available at the first stage, and the data type for which only partial measurements are available at the second stage. For incoming new samples package quantifies how much improvement will be obtained if covariates of new samples for the data types at the second stage are measured. This packages suits for the application where study goal is not only obtain high classification accuracy, but also requires economically cheap classifier.

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AuthorAskar Obulkasim
Bioconductor views Classification Microarray
Date of publicationNone
MaintainerAskar Obulkasim <askar703@gmail.com>
LicenseGPL (>2)
Version1.21.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("stepwiseCM")

Man pages

Classifier: A function to perform classification task.
Classifier.par: A function to perform classification task by multi-core...
CNS: Central Nervous System (CNS) cancer data set.
Curve.generator: A function to generate accuracy curve by passing different...
Proximity: A function to calculate the proximity matrix.
RS.generator: A function to generate the reclassification score.
Step.pred: A function to generate RS cutoff point based the given...
stepwiseCM-package: Stepwise classification of cancer samples using...

Functions

CNS Man page
Classifier Man page Source code
Classifier.par Man page Source code
Curve.generator Man page Source code
Proximity Man page Source code
RS.generator Man page Source code
Step.pred Man page Source code
Wrapper.Classifier Source code
Wrapper.Proximity Source code
stepwiseCM Man page
stepwiseCM-package Man page

Files

DESCRIPTION
NAMESPACE
R
R/Classifier.R
R/Classifier.par.R
R/Curve.generator.R
R/Private.R
R/Proximity.R
R/RS.generator.R
R/Step.pred.R
build
build/vignette.rds
data
data/CNS.rda
data/datalist
inst
inst/doc
inst/doc/stepwiseCM.R
inst/doc/stepwiseCM.Rnw
inst/doc/stepwiseCM.pdf
man
man/CNS.Rd
man/Classifier.Rd
man/Classifier.par.Rd
man/Curve.generator.Rd
man/Proximity.Rd
man/RS.generator.Rd
man/Step.pred.Rd
man/stepwiseCM-package.Rd
vignettes
vignettes/stepwiseCM.Rnw
stepwiseCM documentation built on May 20, 2017, 9:51 p.m.