switchde: Switch-like differential expression across single-cell trajectories

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

AuthorKieran Campbell [aut, cre]
Date of publicationNone
MaintainerKieran Campbell <kieranrcampbell@gmail.com>
LicenseGPL (>= 2)
Version1.0.0
https://github.com/kieranrcampbell/switchde

View on Bioconductor

Files in this package

switchde/DESCRIPTION
switchde/NAMESPACE
switchde/R
switchde/R/mle.R switchde/R/switchde.R switchde/R/zi.R switchde/R/zi_constant.R
switchde/README.md
switchde/build
switchde/build/vignette.rds
switchde/data
switchde/data/ex_pseudotime.rda
switchde/data/synth_gex.rda
switchde/inst
switchde/inst/NEWS
switchde/inst/doc
switchde/inst/doc/switchde_vignette.R
switchde/inst/doc/switchde_vignette.Rmd
switchde/inst/doc/switchde_vignette.html
switchde/inst/example.png
switchde/inst/example_sigmoid.png
switchde/man
switchde/man/ex_pseudotime.Rd switchde/man/example_sigmoid.Rd switchde/man/extract_pars.Rd switchde/man/fit_nzi_model.Rd switchde/man/fit_zi_model.Rd switchde/man/sanitise_inputs.Rd switchde/man/sigmoid.Rd switchde/man/switchde.Rd switchde/man/switchplot.Rd switchde/man/synth_gex.Rd
switchde/tests
switchde/tests/testthat
switchde/tests/testthat.R
switchde/tests/testthat/test_switchde.R
switchde/vignettes
switchde/vignettes/switchde_vignette.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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