Switch-like differential expression across single-cell trajectories

example_sigmoid | Example sigmoid plot |

ex_pseudotime | Synthetic gene pseudotimes |

extract_pars | Extract parameters from fitted model |

fit_nzi_model | Fit a (non-zero-inflated) model for a single gene |

fit_zi_model | Fit a zero-inflated model for a single gene |

sanitise_inputs | Sanitise inputs |

sigmoid | Calculate the mean vector given parameters and pseudotimes... |

switchde | Switch-like model fitting and differential expression test |

switchplot | Plot gene behaviour |

synth_gex | Synthetic gene expression matrix |

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