sysargslist-methods: SYSargsList accessor methods

In systemPipeR: systemPipeR: NGS workflow and report generation environment

Description

Methods to access information from SYSargsList object.

Usage

	sysargslist(x)

Arguments

x	object of class SYSargsList.

Value

various outputs

Author(s)

Daniela Cassol and Thomas Girke

Examples

## Not run: 
## Construct SYSargsList object from Rmd file
library(systemPipeRdata)
script <- system.file("extdata/workflows/rnaseq", "systemPipeRNAseq.Rmd", package="systemPipeRdata")
targets <- system.file("extdata", "targets.txt", package="systemPipeR")
dir_path <- tempdir()
SYSconfig <- initProject(projPath=dir_path, targets=targets, script=script, overwrite = TRUE)
sysargslist <- initWF(sysconfig ="SYSconfig.yml")
  
## End(Not run)

systemPipeR documentation built on Jan. 26, 2021, 2 a.m.