Man pages for tilingArray
Transcript mapping with high-density oligonucleotide tiling arrays
| breakpointsPretend | Accessor methods for breakpointsPretend objects - not to be... |
| class-segmentation | The class segmentation represents a segmentation result. |
| comparisonPlot | Plot a vertical layout of panels for the comparison of... |
| costMatrix | Segmentation cost matrix |
| findsegments | Fit a piecewise constant curve to a sequence of numbers -... |
| gffSub | Example of a genomic feature object |
| normalizeByReference | Probe-specific normalization of hybridization intensities... |
| otherStrand | Return the name of the opposite strand |
| plotAlongChrom | Plot signals and segmentation for a region of a chromosome |
| plotAlongChromLegend | Plot a legend for genomic features |
| plotFeatures | Plot genomic features for a region along a chromosome |
| plotpenLL | Plot the log-likelihood and penalized log-likelihoods (AIC,... |
| plotSegmentationDots | Plot points for a region along a chromosome |
| plotSegmentationHeatmap | Plot a heatmap diagram for a region along a chromosome |
| PMindex | Find the index of the exact match (PM) or background probes... |
| posMin | Find the smallest positive number in a vector |
| qcPlots | Generate simple diagnostic plots for Affymetrix tiling array... |
| readCel2eSet | Read celfiles into an ExpressionSet object. |
| sampleStep | Sampling of ascending numbers to ensure minimal spacing. |
| segChrom | Fit a piecewise constant curve to along chromosome data... |
| segment | Fit a piecewise constant curve: segmentation by dynamic... |
| segnf | Example of a segmentation output object |
| tilingArray-package | tilingArray package overview |
