plotFeatures: Plot genomic features for a region along a chromosome
In tilingArray: Transcript mapping with high-density oligonucleotide tiling arrays

Description Usage Arguments Details Author(s)

Plot genomic features for a region along a chromosome

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plotFeatures(gff, chr, xlim, strand, vpr, featureColorScheme=1, 
             featureExclude=c("chromosome", "nucleotide_match", "insertion"),            
             featureNoLabel=c("uORF", "CDS"), ...)

`gff`	data frame with genome annotation from the GFF file.
`chr`	integer of length 1 specifying the chromosome to plot the features for.
`xlim`	integer of length 2 with start and end coordinates (in bases) for plotting.
`strand`	character scalar which should be set to either `+` or `-` to indicate which strand of DNA to plot the features from.
`vpr`	which viewport to plot the features in.
`featureColorScheme`	numeric scalar, used to select a color scheme for the boxes representing genomic features such as coding sequences, ncRNAs etc. Currently the only value supported is 1.
`featureExclude`	character vector of names of feature types (in gff) that should not be plotted. Default is `"chromosome"`, `"nucleotide_match"` and `"insertion"`. Additional possible candidates include: `"ARS"`, `"repeat\_region"`, `"repeat\_family"` and `"nc\_primary\_transcript"`.
`featureNoLabel`	character vector, names of feature types (in gff) that should not be labelled with their names (if they are plotted).
`...`	additional arguments.