tilingArray
Transcript mapping with high-density oligonucleotide tiling arrays

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gffSub: Example of a genomic feature object

gffSub: Example of a genomic feature object
In tilingArray: Transcript mapping with high-density oligonucleotide tiling arrays

Description Usage Details Author(s) Examples

Description

Example of a genomic feature object

Usage

1
 data(gffSub)

Details

gffSub is a data frame that contains the features from 35000bp - 50000bp in yeast chromosome one.

Author(s)

Zhenyu Xu <zhenyu@ebi.ac.uk>

Examples

1
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  data(segnf)
  data(gffSub)
  nmLabel = colnames(segnf$"1.+"@y)
  plotAlongChrom(segnf,chr=1, coord=c(35000,50000),what="heatmap", 
  		gff=gffSub,rowNamesHeatmap=nmLabel)

tilingArray documentation built on Nov. 8, 2020, 10:59 p.m.

Related to gffSub in tilingArray...

tilingArray index
Package overview Introduction to the plotAlongChrom function Introduction to using the segment function to fit a piecewise constant curve Normalisation with the normalizeByReference function in the tilingArray package Normalisation with the normalizeByReference function in the tilingArray package Segmentation demo Segmentation demo Supplement. Calculation of the cost matrix

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