getSilhouette: Get Silhouette Coefficient from (s)PCA, (s)PLS or...
In timeOmics: Time-Course Multi-Omics data integration

Description Usage Arguments Details Value Examples

getSilhouette is a generic function that compute silhouette coefficient for an object of the type pca, spca, pls, spls, block.pls, block.spls.

1	getSilhouette(object)

object

a mixOmics object of the class pca, spca, pls, spls, block.pls, block.spls

This method extract the componant contribution depending on the object, perform the clustering step, and compute the silhouette coefficient.

silhouette coefficient

demo <- suppressWarnings(get_demo_cluster())
getSilhouette(object = demo$pca)
getSilhouette(object = demo$spca)
getSilhouette(object = demo$pls)
getSilhouette(object = demo$spls)
getSilhouette(object = demo$block.pls)
getSilhouette(object = demo$block.spls)