tomoda: Tomo-seq data analysis

This package provides many easy-to-use methods to analyze and visualize tomo-seq data. The tomo-seq technique is based on cryosectioning of tissue and performing RNA-seq on consecutive sections. (Reference: Kruse F, Junker JP, van Oudenaarden A, Bakkers J. Tomo-seq: A method to obtain genome-wide expression data with spatial resolution. Methods Cell Biol. 2016;135:299-307. doi:10.1016/bs.mcb.2016.01.006) The main purpose of the package is to find zones with similar transcriptional profiles and spatially expressed genes in a tomo-seq sample. Several visulization functions are available to create easy-to-modify plots.

Package details

AuthorWendao Liu [aut, cre] (<https://orcid.org/0000-0002-5124-9338>)
Bioconductor views Clustering GeneExpression RNASeq Sequencing Transcriptomics Visualization
MaintainerWendao Liu <liuwd15@tsinghua.org.cn>
LicenseMIT + file LICENSE
Version1.0.0
URL https://github.com/liuwd15/tomoda
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tomoda")

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tomoda documentation built on Nov. 8, 2020, 8:10 p.m.