parseChromLocString: Parse a string containing a chromosome and location on the...
In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning
Description
Usage
Arguments
Value
Examples
Description
Given a string of the format "chromosome:start-end", pull out the three values contained in
the string and return them as a named list
Usage
1
parseChromLocString(chromLocString)
Arguments
chromLocString
A string of the format "chromosome:start-end"
Value
A named list containing the chromosome, start, and end from the supplied string
Examples
1
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3
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8
# Note: Both examples return :
# list(chrom="chr10", start=118441047, end=118445892)
# Parse a string containing the "chr" prefix for chromosome
chrom.list <- parseChromLocString("chr10:118441047-118445892")
# Parse a string without the "chr" prefix in the chromosome
chrom.list <- parseChromLocString("10:118441047-118445892")
trena documentation built on Nov. 15, 2020, 2:07 a.m.
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Description Usage Arguments Value Examples
Description
Given a string of the format "chromosome:start-end", pull out the three values contained in the string and return them as a named list
Usage
1 | parseChromLocString(chromLocString)
|
Arguments
chromLocString |
A string of the format "chromosome:start-end" |
Value
A named list containing the chromosome, start, and end from the supplied string
Examples
1 2 3 4 5 6 7 8 | # Note: Both examples return :
# list(chrom="chr10", start=118441047, end=118445892)
# Parse a string containing the "chr" prefix for chromosome
chrom.list <- parseChromLocString("chr10:118441047-118445892")
# Parse a string without the "chr" prefix in the chromosome
chrom.list <- parseChromLocString("10:118441047-118445892")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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