getPfms: Retrieve the motifs from the pfms slot
In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning
Description
Usage
Arguments
Value
Examples
Description
Given a MotifMatcher object, return the motifs, which are stored in the pfms slot.
Usage
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## S4 method for signature 'MotifMatcher'
getPfms(obj)
Arguments
obj
An object of class MotifMatcher
Value
The list of motif matrices stored in the pfms slot.
Examples
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# Return the default matrix of JASPAR motifs
library(MotifDb)
motifMatcher <- MotifMatcher(genomeName="hg38", pfms = as.list(query(MotifDb, "sapiens")))
motifs <- getPfms(motifMatcher)
trena documentation built on Nov. 15, 2020, 2:07 a.m.
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Description Usage Arguments Value Examples
Description
Given a MotifMatcher object, return the motifs, which are stored in the pfms slot.
Usage
1 2 | ## S4 method for signature 'MotifMatcher'
getPfms(obj)
|
Arguments
obj |
An object of class MotifMatcher |
Value
The list of motif matrices stored in the pfms slot.
Examples
1 2 3 4 | # Return the default matrix of JASPAR motifs
library(MotifDb)
motifMatcher <- MotifMatcher(genomeName="hg38", pfms = as.list(query(MotifDb, "sapiens")))
motifs <- getPfms(motifMatcher)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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