triform-package: Triform finds peaks in ChIP-sequencing data.

In triform: Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Description

The Triform method uses model-free statistics to identify peak-like distributions of sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Details

Package:	triform
Type:	Package
Version:	1.0
Date:	2012-06-01
License:	GPL-3

It is recommended to make a configuration file in YAML format first. Then run functions "preprocess" and "triform" to find peaks in BED-formatted ChIP-sequencing data.

Author(s)

Karl Kornacker <[e-mail]> and Tony Handstad <[e-mail]> Maintainer: <[e-mail]>

Examples

## Not run: 
preprocess("./config.yml")
triform("./config.yml")

## End(Not run)

triform documentation built on April 28, 2020, 7 p.m.