triform-package: Triform finds peaks in ChIP-sequencing data.

Description Details Author(s) Examples

Description

The Triform method uses model-free statistics to identify peak-like distributions of sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Details

Package: triform
Type: Package
Version: 1.0
Date: 2012-06-01
License: GPL-3

It is recommended to make a configuration file in YAML format first. Then run functions "preprocess" and "triform" to find peaks in BED-formatted ChIP-sequencing data.

Author(s)

Karl Kornacker <[email protected]> and Tony Handstad <[email protected]> Maintainer: <[email protected]>

Examples

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## Not run: 
preprocess("./config.yml")
triform("./config.yml")

## End(Not run)

triform documentation built on Nov. 1, 2018, 2:25 a.m.