velociraptor: Toolkit for Single-Cell Velocity

This package provides Bioconductor-friendly wrappers for RNA velocity calculations in single-cell RNA-seq data. We use the basilisk package to manage Conda environments, and the zellkonverter package to convert data structures between SingleCellExperiment (R) and AnnData (Python). The information produced by the velocity methods is stored in the various components of the SingleCellExperiment class.

Package details

AuthorKevin Rue-Albrecht [aut, cre] (<>), Aaron Lun [aut] (<>), Charlotte Soneson [aut] (<>)
Bioconductor views Coverage GeneExpression Sequencing SingleCell
MaintainerKevin Rue-Albrecht <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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velociraptor documentation built on Nov. 8, 2020, 4:58 p.m.