Based on estimated row dispersions, adjust weights in each row.
A weitrix object, or an object that can be converted to a weitrix
A dispersion for each row.
For large numbers of samples this can be based directly
For small numbers of samples, when using limma,
it should be based on a trend-line fitted to known co-variates of
This can be done using
A SummarizedExperiment object with metadata fields marking it as a weitrix.
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# Adjust weights so dispersion for each row is exactly 1. This is dubious # for a small dataset, but would be fine for a dataset with many columns. comp <- weitrix_components(simwei, p=1, verbose=FALSE) disp <- weitrix_dispersions(simwei, comp) cal <- weitrix_calibrate(simwei, disp) weitrix_dispersions(cal, comp)
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