plotTranscripts: Quickly plot transcript structure without read coverage...
In wiggleplotr: Make read coverage plots from BigWig files

Description Usage Arguments Value Examples

Quickly plot transcript structure without read coverage tracks

plotTranscripts(exons, cdss = NULL, transcript_annotations = NULL,
  rescale_introns = TRUE, new_intron_length = 50,
  flanking_length = c(50, 50), connect_exons = TRUE,
  transcript_label = TRUE, region_coords = NULL)

`exons`	list of GRanges objects, each object containing exons for one transcript. The list must have names that correspond to transcript_id column in transript_annotations data.frame.
`cdss`	list of GRanges objects, each object containing the coding regions (CDS) of a single transcript. The list must have names that correspond to transcript_id column in transript_annotations data.frame. If cdss is not specified then exons list will be used for both arguments. (default: NULL)
`transcript_annotations`	Data frame with at least three columns: transcript_id, gene_name, strand. Used to construct transcript labels. (default: NULL)
`rescale_introns`	Specifies if the introns should be scaled to fixed length or not. (default: TRUE)
`new_intron_length`	length (bp) of introns after scaling. (default: 50)
`flanking_length`	Lengths of the flanking regions upstream and downstream of the gene. (default: c(50,50))
`connect_exons`	Print lines that connect exons together. Set to FALSE when plotting peaks (default: TRUE).
`transcript_label`	If TRUE then transcript labels are printed above each transcript. (default: TRUE).
`region_coords`	Start and end coordinates of the region to plot, overrides flanking_length parameter.