Added a NEWS.md file to track changes to the package
Modified code and files structure of the package
Added Roxygen comments to functions
changes in version 0.99.3 (2020-05-28)
All the R code is now in the /R directory.
Modified R code structure by creating additional modules:
mod_home, fusion between the Home panel and the Help Panel
mod_data_export, a specific module for data export
mod_special_wells, mainly to avoid code redundancy and gain readability
Added unit test for the convertVector2Df function
Added Rd examples for convertVector2Df and drawMap functions
changes in version 0.99.4 (2020-05-28)
Fix the TIMEOUT error during R CMD CHECK
changes in version 0.99.5 (2020-06-02)
Added functions for importing CSV files and ExpressionSet / MSnSet objects
Added the wrapper function allowing to use wpm in command line
Added support for eSet and MSnSet objects as input of the wrapper function
Added unit tests for import functions
changes in version 0.99.6 (2020-06-02)
Added function checkWpmInputs to control the correct use of the wrapperWpm
function (command line use).
Updated the README file and the tutorial vignette explaining how to use WPM
using command line.
changes in version 0.99.7 (2020-06-05)
Added the convertSE function to manage SummarizedExperiments objects in
command line version
Added the grouping factor option for data import (managed for both shiny app
and command line). Now the user can specify the column name corresponding to the
grouping factor wpm has to use for backtracking.
Modified app_ui structure regarding the project title input
Updated the tutorial vignette's content
Updated README file
Revised unit tests for import functions
The WPM package version output in Home panel is now obtained with
Created a new module for the integration of markdown files in the shiny
changes in version 0.99.8 (2020-06-11)
Modified structure of the Home tab in the shiny application
Added new module for the help tab.
Created the help.md file for the Help tab of the app.
Added CSS for tables, and images.
Changed the "blank" word to "buffer" throughout the package.
Changed the "not random" term to "fixed" throughout the package.
Updated images and text in the tutorial vignette.
changes in version 0.99.9 (2020-06-18)
Resolved crashes regarding bad settings when importing CSV
Parameter sections are now collapsible
created module for number of iterations
defined the launch for the browser on port 8000
changed the order of CSV import section in the parameters Panel
some upload parameters are now available only if the CSV file is correctly
added preview of CSV file when importing in the UI
changes in version 0.99.10
corrected unit tests for CSV import
corrected README R commands for convertCSV section
corrected Help tab for the upload file section
corrected the Parameters section in the Vignette
changes in version 0.99.11
fixed issue #10
fixed issue #22
changed the display of the datatable in the Results tab
updated Vignette and Help page about toy dataset (CSV section)
changes in version 0.99.12
fixed the lack of display of images in the help tab
fixed inconsistencies regarding the setting of quotes when importing data
added an infobox for plate dimensions compatibility with the number of samples
changes in version 0.99.13
Added a zzz.R file for the welcome message when loading the package in an R
Corrections in package vignette and Help tab of the shiny app