callplot-methods: Barplot of Percent Present and Absent Calls.

In xps: Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Description

Creates a barplot of percent Present/Marginal/Absent calls.

Usage

callplot(x, beside = TRUE, names = "namepart", col = c("red","green","blue"), legend = c("P","M","A"), ylim = c(0,100), ylab = "detection call [%]", las = 2, ...)

Arguments

x	object of class CallTreeSet.
beside	logical. If FALSE, the columns of height are portrayed as stacked bars, and if TRUE the columns are portrayed as juxtaposed bars.
names	optional vector of sample names.
col	color for P/M/A bars
legend	legend for the plot, defaults to P/M/A.
ylim	the y limits of the plot.
ylab	a label for the y axis.
las	the style of axis labels.
...	optional arguments to be passed to barplot.

Details

Creates a barplot of percent Present/Marginal/Absent calls.

For names=NULL full column names of slot data will be displayed while for names="namepart" column names will be displayed without name extension. If names is a vector of column names, only these columns will displayed as callplot.

Author(s)

Christian Stratowa

See Also

plotCall, pmplot

xps documentation built on Nov. 8, 2020, 6 p.m.