export.root: Export data from ROOT file

In xps: Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Description

Export data as text files directly from a ROOT file.

Usage

export.root(datafile = character(0), schemefile = character(0), treeset = character(0), treename = "*", treetype = character(0), varlist = "*", outfile = character(0), sep = "\t", as.dataframe = FALSE, verbose = TRUE)

Arguments

datafile	name of ROOT data file including full path
schemefile	name of ROOT scheme file including full path
treeset	name of subdirectory in ROOT file where trees are stored
treename	name of ROOT tree to export.
treetype	type of tree(s) to export, see validTreetype.
varlist	names of tree leaves to export.
outfile	name of output file.
sep	column separator
as.dataframe	if TRUE a data.frame will be returned.
verbose	logical, if TRUE print status information.

Details

Export data as text files directly from a ROOT file.

Value

If as.dataframe is TRUE, the data will be imported into the current R session as data.frame. Otherwise, NULL will be returned.

Author(s)

Christian Stratowa

See Also

export, export-methods

Examples

## export data directly from root file
schemefile <- paste(path.package("xps"),"schemes/SchemeTest3.root",sep="/")
datafile   <- paste(path.package("xps"),"rootdata/DataTest3_cel.root",sep="/")
data <- export.root(datafile, schemefile, "DataSet", "*", "cel", "*", "DataOutFile.txt", as.dataframe = TRUE,verbose=FALSE)
head(data)

xps documentation built on Nov. 8, 2020, 6 p.m.