ABHgenotypeR: Easy Visualization of ABH Genotypes
Version 1.0.1

Easy to use functions to visualize marker data from biparental populations. Useful for both analyzing and presenting genotypes in the ABH format.

AuthorStefan Reuscher [aut, cre], Tomoyuki Furuta [aut]
Date of publication2016-02-04 11:27:29
MaintainerStefan Reuscher <reuscher.stefan@gmail.com>
LicenseGPL-3
Version1.0.1
URL http://github.com/StefanReuscher/ABHgenotypeR
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ABHgenotypeR")

Getting started

README.md
ABHGenotypeR"

Popular man pages

ABHgenotypeR: ABHgenotypeR: A package for easy visualization and...
correctUndercalledHets: Correct undercalled heterozygous sites based on flanking...
plotAlleleFreq: Plot the parental allele frequencies along the chromosomes.
plotGenos: Plot graphical genotypes.
plotMarkerDensity: Plot the marker density along the chromosomes.
reportGenos: Report the total and relative number of each allele in a...
writeABHgenotypes: Export a genotype list to a .csv file.
See all...

All man pages Function index File listing

Man pages

ABHgenotypeR: ABHgenotypeR: A package for easy visualization and...
correctStretches: Correct short miscalled stretches based on flanking alleles.
correctUndercalledHets: Correct undercalled heterozygous sites based on flanking...
imputeByFlanks: Impute missing genotypes based on flanking alleles
plotAlleleFreq: Plot the parental allele frequencies along the chromosomes.
plotCompareGenos: Compare to genotype matrices
plotGenos: Plot graphical genotypes.
plotMarkerDensity: Plot the marker density along the chromosomes.
readABHgenotypes: Read in the output of the genosToABH plugin.
reportGenos: Report the total and relative number of each allele in a...
writeABHgenotypes: Export a genotype list to a .csv file.

Functions

ABHgenotypeR Man page
ABHgenotypeR-package Man page
correctStretches Man page Source code
correctUndercalledHets Man page Source code
imputeByFlanks Man page Source code
plotAlleleFreq Man page Source code
plotCompareGenos Man page Source code
plotGenos Man page Source code
plotMarkerDensity Man page Source code
readABHgenotypes Man page Source code
reportGenos Man page Source code
writeABHgenotypes Man page Source code

Files

inst
inst/extdata
inst/extdata/preprefall025TestData.csv
inst/doc
inst/doc/ABHgenotypeR-vignette.Rmd
inst/doc/ABHgenotypeR-vignette.html
inst/doc/ABHgenotypeR-vignette.R
NAMESPACE
NEWS.md
R
R/reportGenos.R
R/plotGenos.R
R/plotCompareGenos.R
R/correctStretches.R
R/ABHgenotypeR.R
R/imputeByFlanks.R
R/readABHgenotypes.R
R/writeABHgenotypes.R
R/plotMarkerDensity.R
R/plotAlleleFreq.R
R/correctUndercalledHets.R
vignettes
vignettes/ABHgenotypeR-vignette.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/correctUndercalledHets.Rd
man/plotCompareGenos.Rd
man/reportGenos.Rd
man/plotAlleleFreq.Rd
man/readABHgenotypes.Rd
man/writeABHgenotypes.Rd
man/ABHgenotypeR.Rd
man/plotGenos.Rd
man/correctStretches.Rd
man/imputeByFlanks.Rd
man/plotMarkerDensity.Rd
ABHgenotypeR documentation built on May 19, 2017, 6:16 p.m.

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