Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

ACNE-package | Package ACNE |

doACNE | (ACNE) |

fitSnpNmf | Non-negative matrix factorization (NMF) of a matrix... |

fitSnpNmfArray | Allele-specific copy number estimation using non-negative... |

NmfPlm | The NmfPlm class |

NmfSnpPlm | The NmfSnpPlm class |

Non-documented_objects | Non-documented objects |

plot.SnpNmfFit | Generates a multi-panel plot summarizing the NMF SNP fit |

pseudoinverse | Calculates the pseudo inverse of a matrix |

removeOutliers | Removes outliers in matrix containing SNP signals |

robustHInit | Robust initialization of the H (copy number) matrix |

robustWInit | Robust initialization of the W (affinity) matrix |

snpArrayToMatrix | Reshapes SNP data in matrix form to array form and vice versa |

WHInit | Initialization of the W and H matrices |

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