MGSM27: Myeloma Genome Signature Matrix 27
In ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells
MGSM27 R Documentation
Myeloma Genome Signature Matrix 27
Description
Newman et al's 2015 plus 5 myeloma specific cell types. Osteoclasts, Adipocytes, Osteoblasts, Multiple Myeloma Plasma Cells, and Plasma Memory Cells
Usage
data("MGSM27")
Format
A data frame with 601 observations on the following 27 variables.
B.cells.naivea numeric vector
B.cells.memorya numeric vector
Plasma.cellsa numeric vector
T.cells.CD8a numeric vector
T.cells.CD4.naivea numeric vector
T.cells.CD4.memory.restinga numeric vector
T.cells.CD4.memory.activateda numeric vector
T.cells.follicular.helpera numeric vector
T.cells.regulatory..Tregs.a numeric vector
T.cells.gamma.deltaa numeric vector
NK.cells.restinga numeric vector
NK.cells.activateda numeric vector
Monocytesa numeric vector
Macrophages.M0a numeric vector
Macrophages.M1a numeric vector
Macrophages.M2a numeric vector
Dendritic.cells.restinga numeric vector
Dendritic.cells.activateda numeric vector
Mast.cells.restinga numeric vector
Mast.cells.activateda numeric vector
Eosinophilsa numeric vector
Neutrophilsa numeric vector
MM.plasma.cella numeric vector
osteoblasta numeric vector
osteoclasta numeric vector
PlasmaMemorya numeric vector
adipocytea numeric vector
Details
MGSM27 as constructed for Identifying a High-risk Cellular Signature in the Multiple Myeloma Bone Marrow Microenvironment.
Source
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-3732/
https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3711/
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-4152/
Examples
data(MGSM27)
heatmap(as.matrix(MGSM27))
ADAPTS documentation built on Sept. 14, 2022, 9:05 a.m.
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| MGSM27 | R Documentation |
Myeloma Genome Signature Matrix 27
Description
Newman et al's 2015 plus 5 myeloma specific cell types. Osteoclasts, Adipocytes, Osteoblasts, Multiple Myeloma Plasma Cells, and Plasma Memory Cells
Usage
data("MGSM27")
Format
A data frame with 601 observations on the following 27 variables.
B.cells.naivea numeric vector
B.cells.memorya numeric vector
Plasma.cellsa numeric vector
T.cells.CD8a numeric vector
T.cells.CD4.naivea numeric vector
T.cells.CD4.memory.restinga numeric vector
T.cells.CD4.memory.activateda numeric vector
T.cells.follicular.helpera numeric vector
T.cells.regulatory..Tregs.a numeric vector
T.cells.gamma.deltaa numeric vector
NK.cells.restinga numeric vector
NK.cells.activateda numeric vector
Monocytesa numeric vector
Macrophages.M0a numeric vector
Macrophages.M1a numeric vector
Macrophages.M2a numeric vector
Dendritic.cells.restinga numeric vector
Dendritic.cells.activateda numeric vector
Mast.cells.restinga numeric vector
Mast.cells.activateda numeric vector
Eosinophilsa numeric vector
Neutrophilsa numeric vector
MM.plasma.cella numeric vector
osteoblasta numeric vector
osteoclasta numeric vector
PlasmaMemorya numeric vector
adipocytea numeric vector
Details
MGSM27 as constructed for Identifying a High-risk Cellular Signature in the Multiple Myeloma Bone Marrow Microenvironment.
Source
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-3732/ https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3711/ https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-4152/
Examples
data(MGSM27) heatmap(as.matrix(MGSM27))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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