pValue | R Documentation |
P-value graph to determine threshold for marker clustering
pValue(dist = seq(25,40, by = 5), pop.size = 100:500,
map.function = "kosambi", LOD = FALSE)
dist |
Numeric range of genetic distances in cM. |
pop.size |
Numeric range of population sizes. |
map.function |
Character string of either |
LOD |
If |
This function provides the ability to create a user specified p-value plot similar to Figure 1.1 in the vignette for the package.
A plot is displayed showing minus log10 pvalue (or LOD score) of linkage vs the range of specified population sizes for different specified genetic distances.
Julian Taylor
Taylor, J., Butler, D. (2017) R Package ASMap: Efficient Genetic Linkage Map Construction and Diagnosis. Journal of Statistical Software, 79(6), 1–29.
mstmap.cross
and mstmap.data.frame
pValue(dist = seq(25, 40, by = 2))
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