AUtests: Approximate Unconditional and Permutation Tests

Performs approximate unconditional and permutation testing for 2x2 contingency tables. Motivated by testing for disease association with rare genetic variants in case-control studies. When variants are extremely rare, these tests give better control of Type I error than standard tests.

Author
Arjun Sondhi, Ken Rice
Date of publication
2016-06-12 22:25:10
Maintainer
Arjun Sondhi <asondhi@uw.edu>
License
GPL-2
Version
0.98

View on CRAN

Man pages

au.firth
Firth AU testing
au.tests
AU testing
au.test.strat
Stratified AU testing
basic.tests
Basic testing
perm.tests
Permutation testing
perm.test.strat
Stratified permutation testing

Files in this package

AUtests
AUtests/inst
AUtests/inst/doc
AUtests/inst/doc/vignette-html.R
AUtests/inst/doc/vignette-html.Rmd
AUtests/inst/doc/vignette-html.html
AUtests/NAMESPACE
AUtests/R
AUtests/R/au.tests.r
AUtests/R/au.firth.r
AUtests/R/au.test.strat.r
AUtests/R/perm.test.strat.r
AUtests/R/basic.tests.r
AUtests/R/perm.tests.r
AUtests/vignettes
AUtests/vignettes/vignette-html.Rmd
AUtests/MD5
AUtests/build
AUtests/build/vignette.rds
AUtests/DESCRIPTION
AUtests/man
AUtests/man/perm.test.strat.Rd
AUtests/man/au.firth.Rd
AUtests/man/au.tests.Rd
AUtests/man/perm.tests.Rd
AUtests/man/au.test.strat.Rd
AUtests/man/basic.tests.Rd