UpdateParam: Update Prop and Freq parameters for EM step

In AdmixPoly: Global and Local Admixture Inference in Polyploids

Update Prop and Freq parameters for EM step

Description

Update Prop and Freq parameters for EM step

Usage

UpdateParam(
  Geno,
  Prop,
  Freq,
  ParamToUpdate = "both",
  MinParamBound = 1e-06,
  NbThreads = 0L
)

Arguments

Geno	List of genotying matrices of size "number of markers", with each matrix of dimension "number of individuals" x "number of alleles" whose elements consists of discrete or continuous dosages
Prop	Matrix of admixture coefficients of dimension "number of individuaks" x "number of groups"
Freq	List of allele frequency matrices of size "number of markers", with each matrix of dimension "number of groups" x "number of alleles"
ParamToUpdate	Specify "both", "Prop" or "Freq" to update both admixture proportions and allele frequencies, only admixture proportions or only allele frequencies, respectively
MinParamBound	Minimum bound value for parameters
NbThreads	Number of threads to be used (positive integer) with 0 default values setting automatically all threads available

Value

list of updated parameters with two elements: Prop and Freq

AdmixPoly documentation built on June 18, 2026, 1:06 a.m.