Description Usage Arguments Note Examples
A line plot summary of sum of pairs score between two multiple sequence alignments
1 | plot_SP_summary(x, CS = TRUE, display = TRUE)
|
x |
an object of type "pairwise alignment comparison" (typically the summary file generated by compare_alignments) |
CS |
indicate columns with 100 percent identity using markers on the x-axis (default = TRUE) |
display |
display this plot (default = TRUE) |
This function generates a plot that summarises the columnwise sums of pairs for the two multiple sequence alignments. For each column of the comparison alignment, it plots the proportion of conserved residue pairs as a proportion of the poassible residue pairs. The overall sum of pairs score, reverse sum of pairs score, and column score are also reported as percentages.
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