Description Usage Arguments Note Examples
A heatmap plot of the dissimilarity matrix of two multiple sequence alignments
1 | plot_dissimilarity_matrix(x, display = TRUE)
|
x |
an object of type "pairwise alignment comparison" (typically the summary file generated by compare_alignments) |
display |
display this plot (default = TRUE) |
This function displays the dissimilarity categories for all characters in the reference alignment. This gives a representation of which columns are well agreed upon by the MSAs, and which sequence regions of the reference alignment are split, merged, or shifted.
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