AmpGram: Prediction of Antimicrobial Peptides

Predicts antimicrobial peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI. The AmpGram model is too large for CRAN and it has to be downloaded separately from the repository: <>.

Package details

AuthorMichal Burdukiewicz [cre, aut] (<>), Katarzyna Sidorczuk [ctb], Filip Pietluch [ctb], Dominik Rafacz [aut], Stefan Roediger [ctb] (<>), Jaroslaw Chilimoniuk [ctb] (<>)
MaintainerMichal Burdukiewicz <>
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the AmpGram package in your browser

Any scripts or data that you put into this service are public.

AmpGram documentation built on July 1, 2020, 7:50 p.m.