get_AMPs: Get putative antimicrobial peptides
In AmpGram: Prediction of Antimicrobial Peptides

Function gets sequences recognized as antimicrobial peptides and returns as data.frame.

1	get_AMPs(x)

`x`	AmpGram predictions for a single protein

a data.frame with sequences recognized as antimicrobial peptides (AMPs). It consists of two columns:

putative_AMP: amino acid sequence of a 10-mer (subsequence of an analyzed peptide) predicted as AMP.
prob: Probability with which a 10-mer is recognized as AMP.

1 2	data(AmpGram_predictions) get_AMPs(AmpGram_predictions [[2]])

AmpGram documentation built on July 1, 2020, 7:50 p.m.

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