View source: R/Anaconda.functions.R
taxon_mwuPlot | R Documentation |
taxon mwuPlot for taxonomic analysis
taxon_mwuPlot( inFile, goAnnotations, goDivision, level1 = 0.1, level2 = 0.05, level3 = 0.01, absValue = -log(0.05, 10), adjusted = TRUE, txtsize = 1, font.family = "sans", treeHeight = 0.5, colors = NULL, verbose = TRUE )
inFile |
inFile - results object from the DASVA analysis |
goAnnotations |
parallel to goAnnotations from gomwuStats from RBGOA. Here, "database_bacteria_package_all.tab" if Bacteria, "database_fungi_package_all.tab" if Fungi |
goDivision |
parallel to goAnnotations from gomwuStats from RBGOA. Here, "TR" = taxonomic Rank, don't change this |
level1 |
level1 |
level2 |
level2 |
level3 |
level3 |
absValue |
absValue |
adjusted |
adjusted |
txtsize |
txtsize |
font.family |
font.family |
treeHeight |
treeHeight |
colors |
colors |
verbose |
verbose |
taxon mwuPlot and goods "Table_02_taxon_mwuPlot.txt"
## Not run: taxon_mwuPlot(input,...)
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