import_seurat_scANANSE: import_seurat_scANANSE

In AnanseSeurat: Construct ANANSE GRN-Analysis Seurat

import_seurat_scANANSE

Description

import the influences from a anansnake directory into a seurat object

Usage

import_seurat_scANANSE(
  seurat_object,
  cluster_id = "seurat_clusters",
  anansnake_inf_dir = "None",
  return_df = FALSE
)

Arguments

seurat_object	seurat object
cluster_id	ID used for finding clusters of cells
anansnake_inf_dir	influence directory generated by anansnake
return_df	return both the seurat object and a dataframe with influence scores as a list

Value

seurat object with the influence scores addes as an assay

Examples

sce_small <- readRDS(system.file("extdata","sce_small.Rds",package = 'AnanseSeurat'))
infdir <- system.file("extdata","influence",package = 'AnanseSeurat')
sce_small <- import_seurat_scANANSE(sce_small, anansnake_inf_dir = infdir)

AnanseSeurat documentation built on Nov. 12, 2023, 1:08 a.m.