AssotesteR: Statistical Tests for Genetic Association Studies

R package with statistical tests and methods for genetic association studies with emphasis on rare variants and binary (dichotomous) traits

Author
Gaston Sanchez
Date of publication
2013-12-19 00:09:14
Maintainer
Gaston Sanchez <gaston.stat@gmail.com>
License
GPL (>= 3)
Version
0.1-10
URLs

View on CRAN

Man pages

ASCORE
ASCORE: Adaptive Score Test
AssotesteR-internal
Internal AssotesteR objects
AssotesteR-package
Statistical Tests for Genetic Association Studies
ASSU
ASSU: Adaptive Sum of Squared Score U Statistic
ASSUW
ASSUW: Adaptive Sum of Squared Score U Statistic
ASUM
ASUM: Adaptive Sum Statistic
BST
BST: Bayesian Score Test
CALPHA
CALPHA: C-alpha Score Test
CARV
CARV: Comprehrensive Approach to Analyzing Rare Variants
CAST
CAST: Cohort Allelic Sums Test
CMAT
CMAT: Cumulative Minor Allele Test
CMC
CMC: Combined Multivariate and Collapsing Method
GDBR
GDBR: Genomic Distance-Based Regression
genodata
genodata
MULTI
MULTI: Multiple Tests
ORWSS
ORWSS: Odds Ratio Weighted Sum Statistic
RARECOVER
RARECOVER Algorithm
RBT
RBT: Replication Based Test
RVT1
RVT1: Rare Variant Test 1 for dichotomous traits
RVT2
RVT2: Rare Variant Test 2 for dichotomous traits
RWAS
RWAS: Rare-Variant Weighted Aggregate Statistic
SCORE
SCORE: Score Test (from Logistic Regression)
SEQSUM
SEQSUM: Sequential Sum Score Test
SKAT
SKAT: Sequence Kernel Association Test
SSU
SSU: Sum of Squared Score U Statistic
SSUW
SSUW: Weighted Sum of Squared Score U Statistic
SUM
SUM: Sum Test
TTEST
TTEST: Hotelling T2 Test
UMINP
UMINP: Univariate minP (minimum p-value)
VT
VT: Variable Threshold
WSS
WSS: Weighted Sum Statistic
WST
WST: Weighted Score Test

Files in this package

AssotesteR
AssotesteR/src
AssotesteR/src/gdbr_dists.c
AssotesteR/src/skat_kernels.c
AssotesteR/NAMESPACE
AssotesteR/NEWS
AssotesteR/data
AssotesteR/data/genodata.rda
AssotesteR/R
AssotesteR/R/ASSUW.R
AssotesteR/R/AssotesteR-internal.R
AssotesteR/R/WST.R
AssotesteR/R/RBT.R
AssotesteR/R/ASCORE.Ord.R
AssotesteR/R/my_check.R
AssotesteR/R/CAST.R
AssotesteR/R/UMINP.R
AssotesteR/R/RVT1.R
AssotesteR/R/WSS.R
AssotesteR/R/gdbr_IBS.R
AssotesteR/R/gdbr_wIBS.R
AssotesteR/R/CMAT.R
AssotesteR/R/GDBR.R
AssotesteR/R/kernel_wIBS.R
AssotesteR/R/VT.R
AssotesteR/R/ASSU.R
AssotesteR/R/CALPHA.R
AssotesteR/R/CARV.R
AssotesteR/R/MULTI.R
AssotesteR/R/BST.R
AssotesteR/R/SUM.R
AssotesteR/R/TTEST.R
AssotesteR/R/kernel_twowayx.R
AssotesteR/R/RWAS.R
AssotesteR/R/ASUM.Ord.R
AssotesteR/R/print.assoctest.R
AssotesteR/R/SSUW.R
AssotesteR/R/CMC.R
AssotesteR/R/SEQSUM.R
AssotesteR/R/SSU.R
AssotesteR/R/ASCORE.R
AssotesteR/R/ASSU.Ord.R
AssotesteR/R/SCORE.R
AssotesteR/R/kernel_IBS.R
AssotesteR/R/ASSUW.Ord.R
AssotesteR/R/SKAT.R
AssotesteR/R/ORWSS.R
AssotesteR/R/RVT2.R
AssotesteR/R/ASUM.R
AssotesteR/R/RARECOVER.R
AssotesteR/MD5
AssotesteR/DESCRIPTION
AssotesteR/man
AssotesteR/man/CMAT.Rd
AssotesteR/man/ORWSS.Rd
AssotesteR/man/CALPHA.Rd
AssotesteR/man/SSU.Rd
AssotesteR/man/SUM.Rd
AssotesteR/man/WSS.Rd
AssotesteR/man/MULTI.Rd
AssotesteR/man/SCORE.Rd
AssotesteR/man/SEQSUM.Rd
AssotesteR/man/WST.Rd
AssotesteR/man/SSUW.Rd
AssotesteR/man/RARECOVER.Rd
AssotesteR/man/UMINP.Rd
AssotesteR/man/CARV.Rd
AssotesteR/man/ASSUW.Rd
AssotesteR/man/BST.Rd
AssotesteR/man/TTEST.Rd
AssotesteR/man/RBT.Rd
AssotesteR/man/AssotesteR-package.Rd
AssotesteR/man/RVT1.Rd
AssotesteR/man/ASSU.Rd
AssotesteR/man/SKAT.Rd
AssotesteR/man/ASCORE.Rd
AssotesteR/man/CMC.Rd
AssotesteR/man/ASUM.Rd
AssotesteR/man/CAST.Rd
AssotesteR/man/RVT2.Rd
AssotesteR/man/GDBR.Rd
AssotesteR/man/VT.Rd
AssotesteR/man/AssotesteR-internal.Rd
AssotesteR/man/RWAS.Rd
AssotesteR/man/genodata.Rd