AssotesteR: Statistical Tests for Genetic Association Studies
Version 0.1-10

R package with statistical tests and methods for genetic association studies with emphasis on rare variants and binary (dichotomous) traits

Browse man pages Browse package API and functions Browse package files

AuthorGaston Sanchez
Date of publication2013-12-19 00:09:14
MaintainerGaston Sanchez <gaston.stat@gmail.com>
LicenseGPL (>= 3)
Version0.1-10
URL http://www.gastonsanchez.com
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("AssotesteR")

Man pages

ASCORE: ASCORE: Adaptive Score Test
AssotesteR-internal: Internal AssotesteR objects
AssotesteR-package: Statistical Tests for Genetic Association Studies
ASSU: ASSU: Adaptive Sum of Squared Score U Statistic
ASSUW: ASSUW: Adaptive Sum of Squared Score U Statistic
ASUM: ASUM: Adaptive Sum Statistic
BST: BST: Bayesian Score Test
CALPHA: CALPHA: C-alpha Score Test
CARV: CARV: Comprehrensive Approach to Analyzing Rare Variants
CAST: CAST: Cohort Allelic Sums Test
CMAT: CMAT: Cumulative Minor Allele Test
CMC: CMC: Combined Multivariate and Collapsing Method
GDBR: GDBR: Genomic Distance-Based Regression
genodata: genodata
MULTI: MULTI: Multiple Tests
ORWSS: ORWSS: Odds Ratio Weighted Sum Statistic
RARECOVER: RARECOVER Algorithm
RBT: RBT: Replication Based Test
RVT1: RVT1: Rare Variant Test 1 for dichotomous traits
RVT2: RVT2: Rare Variant Test 2 for dichotomous traits
RWAS: RWAS: Rare-Variant Weighted Aggregate Statistic
SCORE: SCORE: Score Test (from Logistic Regression)
SEQSUM: SEQSUM: Sequential Sum Score Test
SKAT: SKAT: Sequence Kernel Association Test
SSU: SSU: Sum of Squared Score U Statistic
SSUW: SSUW: Weighted Sum of Squared Score U Statistic
SUM: SUM: Sum Test
TTEST: TTEST: Hotelling T2 Test
UMINP: UMINP: Univariate minP (minimum p-value)
VT: VT: Variable Threshold
WSS: WSS: Weighted Sum Statistic
WST: WST: Weighted Score Test

Functions

ASCORE Man page Source code
ASCORE.Ord Man page Source code
ASSU Man page Source code
ASSU.Ord Man page Source code
ASSUW Man page Source code
ASSUW.Ord Man page Source code
ASUM Man page Source code
ASUM.Ord Man page Source code
AssotesteR Man page
BST Man page Source code
CALPHA Man page Source code
CARV Man page Source code
CAST Man page Source code
CMAT Man page Source code
CMC Man page Source code
GDBR Man page Source code
MULTI Man page Source code
ORWSS Man page Source code
RARECOVER Man page Source code
RBT Man page Source code
RVT1 Man page Source code
RVT2 Man page Source code
RWAS Man page Source code
SCORE Man page Source code
SEQSUM Man page Source code
SKAT Man page Source code
SSU Man page Source code
SSUW Man page Source code
SUM Man page Source code
TTEST Man page Source code
UMINP Man page Source code
VT Man page Source code
WSS Man page Source code
WST Man page Source code
gdbr_IBS Man page Source code
gdbr_wIBS Man page Source code
genodata Man page
kernel_IBS Man page Source code
kernel_twowayx Man page Source code
kernel_wIBS Man page Source code
my_ascore_method Source code
my_assu_method Source code
my_assuw_method Source code
my_asum_method Source code
my_bst_method Source code
my_calpha_method Source code
my_check Source code
my_cmat_method Source code
my_cmc_method Source code
my_gdbr_fstat Source code
my_getUV Source code
my_hard_approach Source code
my_orwss_method Source code
my_rarecov_method Source code
my_rbt_method Source code
my_rvt1_method Source code
my_rvt2_method Source code
my_rwas_method Source code
my_score_carv Source code
my_score_method Source code
my_ssu_method Source code
my_ssuw_method Source code
my_stepup_approach Source code
my_sum_method Source code
my_uminp_method Source code
my_uni_score Source code
my_variable_approach Source code
my_vt_method Source code
my_weights_wss Source code Source code
my_wss_method Source code
my_wst_method Source code
print.assoctest Man page Source code
print.rarecover Man page
print.stepup Man page

Files

src
src/gdbr_dists.c
src/skat_kernels.c
NAMESPACE
NEWS
data
data/genodata.rda
R
R/ASSUW.R
R/AssotesteR-internal.R
R/WST.R
R/RBT.R
R/ASCORE.Ord.R
R/my_check.R
R/CAST.R
R/UMINP.R
R/RVT1.R
R/WSS.R
R/gdbr_IBS.R
R/gdbr_wIBS.R
R/CMAT.R
R/GDBR.R
R/kernel_wIBS.R
R/VT.R
R/ASSU.R
R/CALPHA.R
R/CARV.R
R/MULTI.R
R/BST.R
R/SUM.R
R/TTEST.R
R/kernel_twowayx.R
R/RWAS.R
R/ASUM.Ord.R
R/print.assoctest.R
R/SSUW.R
R/CMC.R
R/SEQSUM.R
R/SSU.R
R/ASCORE.R
R/ASSU.Ord.R
R/SCORE.R
R/kernel_IBS.R
R/ASSUW.Ord.R
R/SKAT.R
R/ORWSS.R
R/RVT2.R
R/ASUM.R
R/RARECOVER.R
MD5
DESCRIPTION
man
man/CMAT.Rd
man/ORWSS.Rd
man/CALPHA.Rd
man/SSU.Rd
man/SUM.Rd
man/WSS.Rd
man/MULTI.Rd
man/SCORE.Rd
man/SEQSUM.Rd
man/WST.Rd
man/SSUW.Rd
man/RARECOVER.Rd
man/UMINP.Rd
man/CARV.Rd
man/ASSUW.Rd
man/BST.Rd
man/TTEST.Rd
man/RBT.Rd
man/AssotesteR-package.Rd
man/RVT1.Rd
man/ASSU.Rd
man/SKAT.Rd
man/ASCORE.Rd
man/CMC.Rd
man/ASUM.Rd
man/CAST.Rd
man/RVT2.Rd
man/GDBR.Rd
man/VT.Rd
man/AssotesteR-internal.Rd
man/RWAS.Rd
man/genodata.Rd
AssotesteR documentation built on May 19, 2017, 2:56 p.m.