AutoPipe_tSNE: Implemented t-distributed stochastic neighbor embedding

In AutoPipe: Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis

Description

This function is used to upload a table into R for further use in the AutoPipe

Usage

AutoPipe_tSNE(me,perplexity=30,max_iter=500,groups_men)

Arguments

me	The path of the expression table
perplexity	numeric; Perplexity parameter
max_iter	integer; Number of iterations (default: 1000)
groups_men	the data frame with the group clustering that the function Groups_Sup or top_supervised (2. place on the list) returns with the data about each sample and its coressponding cluster.

AutoPipe documentation built on May 1, 2019, 7:28 p.m.