cons_clust: A function to plot do a Consensus clustering to validate the...

In AutoPipe: Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis

Description

this function calls the ConsensusClusterPlus function with thedaraset and plots a plot with the heatmaps of the clustering for each number of clusters from 2 to max_clust

Usage

cons_clust(data,max_clust,TOPgenes)

Arguments

data	this is the data for the ConsensusClusterPlus
max_clust	the max number of clusters that should be evaluated.
TOPgenes	the number of the top genes to choose for the clustering

Value

plots a plot with all the heatmaps from the ConsensusClusterPlus for the number ofd clusters 2 to max_clust the same return value as the COnsensusClusterPlus

Examples

data(rna)
cons_clust(rna,5,TOPgenes=50)

AutoPipe documentation built on May 1, 2019, 7:28 p.m.