data: Save the information

In Autoplotprotein: Development of Visualization Tools for Protein Sequence

Description

Keep all the information of the painted protein in a file

Usage

data()

Details

Save information, including protein mutation point information, domain information, option information, enlargement information, protein information, length information and site information

Value

Data of various kinds of information

Author(s)

Xiaoyu Zhang

References

https://cran.r-project.org/doc/manuals/R-exts.html

See Also

codehelp

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function () 
{
    library("ade4")
    library("seqinr")
    library("plotrix")
    protein = read.table("Protein.txt", sep = "\t", stringsAsFactors = F)
    domain = read.table("Domain.txt", sep = "\t", stringsAsFactors = F)
    length = read.table("Length.txt", sep = "\t", stringsAsFactors = F)
    site = read.table("Site.txt", sep = "\t", stringsAsFactors = F)
    muta = read.table("Mutagenesis.txt", sep = "\t", stringsAsFactors = F)
    option = read.table("Option.txt", sep = "\t", stringsAsFactors = F)
    zoomin = read.table("ZoomIn.txt", sep = "\t", stringsAsFactors = F)
    c <- merge(muta, domain, all = T, sort = FALSE)
    c <- merge(c, option, all = T, sort = FALSE)
    c <- merge(c, zoomin, all = T, sort = FALSE)
    c <- merge(c, protein, all = T, sort = FALSE)
    c <- merge(c, length, all = T, sort = FALSE)
    c <- merge(c, site, all = T, sort = FALSE)
    write.table(c, file = "data.txt", sep = "\t", quote = FALSE, 
        row.names = F, col.names = F)
  }

Autoplotprotein documentation built on May 2, 2019, 9:12 a.m.