Man pages for BAT
Biodiversity Assessment Tools

accuracyScaled mean squared error of accumulation curves.
aicAkaike Information Criterion.
alphaAlpha diversity (Taxon, Phylogenetic or Functional Diversity...
alpha.accumAlpha diversity accumulation curves (observed and estimated).
alpha.estimateAlpha diversity estimates.
arrabidaSample data of spiders in Arrabida (Portugal)
betaBeta diversity (Taxon, Phylogenetic or Functional Diversity -...
beta.accumBeta diversity accumulation curves.
beta.evennessBeta diversity evenness (Taxon, Phylogenetic or Functional...
beta.multiBeta diversity among multiple communities.
contributionContribution of species or individuals to total...
coverageCoverage of datasets.
cwdCommunity Weighted Dispersion.
cweCommunity Weighted Evenness.
cwmCommunity Weighted Mean.
dispersionPhylogenetic/functional dispersion of species or individuals.
dummyDummify variables.
evennessTaxonomic/phylogenetic/functional evenness of species or...
evenness.contributionContribution of each species or individual to the total...
fillFilling missing data.
functreeFunctional tree for 338 species of spiders
gammaGamma diversity (Taxon, Phylogenetic or Functional Diversity...
gdmGeneral dynamic model of oceanic island biogeography (GDM).
geresSample data of spiders in Geres (Portugal)
gowerGower distance.
guadianaSample data of spiders in Guadiana (Portugal)
hillHill numbers.
hull.alphaAlpha diversity using convex hull hypervolumes.
hull.betaBeta diversity partitioning using convex hull hypervolumes.
hull.buildBuild convex hull hypervolumes.
hull.contributionContribution of each observation to a convex hull...
hull.gammaGamma diversity using convex hull hypervolumes.
hull.sadSpecies-abundance distribution (SAD) using convex hulls.
hyper.buildBuild hyperspace.
hyper.qualityQuality of hyperspace.
iaorInterspecific abundance-occupancy relationship (IAOR).
kernel.alphaAlpha diversity using kernel density hypervolumes.
kernel.betaBeta diversity partitioning using kernel density...
kernel.beta.evennessFunctional beta diversity evenness using kernel density...
kernel.buildBuild kernel hypervolumes.
kernel.contributionContribution of each observation to the kernel density...
kernel.dispersionFunctional dispersion of kernel density hypervolumes.
kernel.evennessFunctional evenness of kernel density hypervolumes.
kernel.evenness.contributionContribution of each observation to the evenness of a kernel...
kernel.gammaGamma diversity using kernel density hypervolumes.
kernel.hotspotsHotspots in hypervolumes.
kernel.originalityFunctional originality of observations in kernel density...
kernel.sadSpecies-abundance distribution (SAD) using kernel density...
kernel.similarityPairwise similarity among kernel density hypervolumes.
linneanCreate Linnean tree.
mixtureMixture model.
optim.alphaOptimization of alpha diversity sampling protocols.
optim.alpha.statsEfficiency statistics for alpha-sampling.
optim.betaOptimization of beta diversity sampling protocols.
optim.beta.statsEfficiency statistics for beta-sampling.
optim.spatialOptimization of spatial sampling.
originalityPhylogenetic/functional originality of species or...
phylotreeTaxonomic tree for 338 species of spiders (surrogate for...
r2Model R2.
raoRao quadratic entropy.
raster.alphaMaps of alpha diversity (Taxon, Phylogenetic or Functional...
raster.betaMaps of beta diversity (Taxon, Phylogenetic or Functional...
raster.dispersionMaps of phylogenetic/functional dispersion of species or...
raster.evennessMaps of phylogenetic/functional evenness of species or...
sadSpecies-abundance distribution (SAD).
sarSpecies-area relationship (SAR).
sesStandard Effect Size.
sim.plotPlots of simulated species spatial distributions.
sim.sadSimulation of species abundance distributions (SAD).
sim.sampleSimulation of sampling from artificial communities.
sim.spatialSimulation of species spatial distributions.
sim.treeSimulation of phylogenetic or functional tree.
slopeSlope of accumulation curves.
standardStandardize variables.
tree.buildBuild functional tree.
tree.qualityQuality of tree.
tree.zeroConvert negative branches of tree.
uniquenessPhylogenetic/functional uniqueness of species.
BAT documentation built on Oct. 11, 2023, 1:07 a.m.