BEDMatrix: Matrices Backed by Binary PED Files (PLINK)

A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (http://pngu.mgh.harvard.edu/~purcell/plink/), the whole genome association analysis toolset, without loading the entire file into memory.

Author
Alexander Grueneberg [aut, cre], Lian Lian [ctb], Gustavo de los Campos [ctb]
Date of publication
2016-09-28 19:34:55
Maintainer
Alexander Grueneberg <alexander.grueneberg@googlemail.com>
License
MIT + file LICENSE
Version
1.3.0
URLs

View on CRAN

Man pages

BEDMatrix
Creates a matrix wrapper around binary PED files.
BEDMatrix-package
'BEDMatrix': A Wrapper for Binary PED Files

Files in this package

BEDMatrix
BEDMatrix/inst
BEDMatrix/inst/extdata
BEDMatrix/inst/extdata/example.bim
BEDMatrix/inst/extdata/example.raw
BEDMatrix/inst/extdata/example.map
BEDMatrix/inst/extdata/example.ped
BEDMatrix/inst/extdata/example.fam
BEDMatrix/inst/extdata/example.bed
BEDMatrix/tests
BEDMatrix/tests/testthat.R
BEDMatrix/tests/testthat
BEDMatrix/tests/testthat/standalone.bed
BEDMatrix/tests/testthat/test-BEDMatrix.R
BEDMatrix/src
BEDMatrix/src/Makevars
BEDMatrix/src/BEDMatrix.cpp
BEDMatrix/src/Makevars.win
BEDMatrix/NAMESPACE
BEDMatrix/NEWS.md
BEDMatrix/R
BEDMatrix/R/BEDMatrix.R
BEDMatrix/R/package.R
BEDMatrix/README.md
BEDMatrix/MD5
BEDMatrix/DESCRIPTION
BEDMatrix/man
BEDMatrix/man/examples
BEDMatrix/man/examples/BEDMatrix.R
BEDMatrix/man/BEDMatrix-package.Rd
BEDMatrix/man/BEDMatrix.Rd
BEDMatrix/LICENSE