BEDMatrix: Extract Genotypes from a PLINK .bed File
Version 1.4.0

A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (), the whole genome association analysis toolset, without loading the entire file into memory.

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AuthorAlexander Grueneberg [aut, cre], Lian Lian [ctb], Gustavo de los Campos [ctb]
Date of publication2017-05-07 13:33:10 UTC
MaintainerAlexander Grueneberg <alexander.grueneberg@googlemail.com>
LicenseMIT + file LICENSE
Version1.4.0
URL https://github.com/QuantGen/BEDMatrix
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BEDMatrix")

Man pages

BEDMatrix-class: A Class to Extract Genotypes from a PLINK .bed File.
BEDMatrix-package: A Package to Extract Genotypes from a PLINK .bed File.
initialize-BEDMatrix-method: Create a BEDMatrix Object from a PLINK .bed File.
show-BEDMatrix-method: Show a BEDMatrix Object.

Functions

BEDMatrix Man page
BEDMatrix-class Man page
BEDMatrix-package Man page
as.matrix.BEDMatrix Source code
dim.BEDMatrix Source code
dimnames.BEDMatrix Source code
extract_matrix Source code
extract_vector Source code
initialize Source code
initialize,BEDMatrix-method Man page
is.matrix.BEDMatrix Source code
length.BEDMatrix Source code
show Source code
show,BEDMatrix-method Man page
str.BEDMatrix Source code

Files

inst
inst/extdata
inst/extdata/example.bim
inst/extdata/example.raw
inst/extdata/example.fam
inst/extdata/example.bed
tests
tests/testthat.R
tests/testthat
tests/testthat/standalone.bed
tests/testthat/test-length.R
tests/testthat/helper.R
tests/testthat/test-BEDMatrix.R
tests/testthat/test-extract.R
src
src/Makevars
src/BEDMatrix.cpp
src/Makevars.win
src/init.c
NAMESPACE
NEWS.md
R
R/BEDMatrix.R
R/package.R
README.md
MD5
DESCRIPTION
man
man/examples
man/examples/BEDMatrix.R
man/examples/initialize.R
man/BEDMatrix-package.Rd
man/initialize-BEDMatrix-method.Rd
man/show-BEDMatrix-method.Rd
man/BEDMatrix-class.Rd
LICENSE
BEDMatrix documentation built on May 20, 2017, 12:27 a.m.