API for BGData
A Suite of Packages for Analysis of Big Genomic Data
| Global functions | |
|---|---|
| BGData | Man page Source code |
| BGData-class | Man page |
| BGData-package | Man page |
| FWD | Man page Source code |
| GWAS | Man page Source code |
| GWAS.SKAT | Source code |
| GWAS.lsfit | Source code |
| GWAS.rayOLS | Source code |
| addOne | Source code |
| apply2 | Source code |
| as.BGData | Man page Source code |
| as.BGData.BEDMatrix | Man page Source code |
| as.BGData.ColumnLinkedMatrix | Man page Source code |
| as.BGData.RowLinkedMatrix | Man page Source code |
| chunkedApply | Man page Source code |
| chunkedMap | Man page Source code |
| ffNodeInitializer | Source code |
| file-backed-matrices | Man page |
| findRelated | Man page Source code |
| findRelated.matrix | Man page Source code |
| findRelated.symDMatrix | Man page Source code |
| fitSYS | Source code |
| generateMap | Source code |
| generatePheno | Source code |
| geno | Man page |
| geno,BGData-method | Man page |
| geno-class | Man page |
| geno<- | Man page |
| geno<-,BGData-method | Man page |
| getCoefficients | Source code |
| getCoefficients.glm | Source code |
| getCoefficients.lm | Source code |
| getCoefficients.lmerMod | Source code |
| getColumnCount | Source code |
| getFileHeader | Source code |
| getG | Man page Source code |
| getG_symDMatrix | Man page Source code |
| getLineCount | Source code |
| getResponse | Source code |
| initializeGeno | Source code |
| initializeGeno.BEDMatrix | Source code |
| initializeGeno.LinkedMatrix | Source code |
| initializeGeno.big.matrix | Source code |
| initializeGeno.default | Source code |
| initializeGeno.ff_matrix | Source code |
| load.BGData | Man page Source code |
| loadAlternatePhenotypeFile | Source code |
| loadBimFile | Source code |
| loadExample | Source code |
| loadFamFile | Source code |
| map | Man page |
| map,BGData-method | Man page |
| map<- | Man page |
| map<-,BGData-method | Man page |
| multi-level-parallelism | Man page |
| normalizeType | Source code |
| orderedMerge | Man page Source code |
| padDigits | Source code |
| parseRAW | Source code |
| pedDims | Source code |
| pheno | Man page |
| pheno,BGData-method | Man page |
| pheno<- | Man page |
| pheno<-,BGData-method | Man page |
| preprocess | Man page Source code |
| randomString | Source code |
| rayOLS | Source code |
| readRAW | Man page Source code |
| readRAW_big.matrix | Man page Source code |
| readRAW_matrix | Man page Source code |
| segments | Man page Source code |
| simplifyList | Source code |
| summarize | Man page Source code |
