API for BGData
A Suite of Packages for Analysis of Big Genomic Data

Global functions
BGData Man page Source code
BGData-class Man page
BGData-package Man page
GWAS Man page Source code
GWAS.SKAT Source code
GWAS.lsfit Source code
GWAS.rayOLS Source code
apply2 Source code
as.BGData Man page Source code
as.BGData.BEDMatrix Man page Source code
as.BGData.ColumnLinkedMatrix Man page Source code
as.BGData.RowLinkedMatrix Man page Source code
chunkedApply Man page Source code
chunkedMap Man page Source code
ffNodeInitializer Source code
file-backed-matrices Man page
findRelated Man page Source code
findRelated.matrix Man page Source code
findRelated.symDMatrix Man page Source code
generateMap Source code
generatePheno Source code
geno Man page
geno,BGData-method Man page
geno-class Man page
geno<- Man page
geno<-,BGData-method Man page
getCoefficients Source code
getCoefficients.glm Source code
getCoefficients.lm Source code
getCoefficients.lmerMod Source code
getColumnCount Source code
getFileHeader Source code
getG Man page Source code
getG_symDMatrix Man page Source code
getLineCount Source code
getResponse Source code
initializeGeno Source code
initializeGeno.BEDMatrix Source code
initializeGeno.LinkedMatrix Source code
initializeGeno.big.matrix Source code
initializeGeno.default Source code
initializeGeno.ff_matrix Source code
load.BGData Man page Source code
loadAlternatePhenotypeFile Source code
loadBimFile Source code
loadExample Source code
loadFamFile Source code
map Man page
map,BGData-method Man page
map<- Man page
map<-,BGData-method Man page
multi-level-parallelism Man page
normalizeType Source code
orderedMerge Man page Source code
padDigits Source code
parseRAW Source code
pedDims Source code
pheno Man page
pheno,BGData-method Man page
pheno<- Man page
pheno<-,BGData-method Man page
preprocess Man page Source code
randomString Source code
rayOLS Source code
readRAW Man page Source code
readRAW_big.matrix Man page Source code
readRAW_matrix Man page Source code
simplifyList Source code
summarize Man page Source code
BGData documentation built on Aug. 3, 2020, 1:07 a.m.