Man pages for BGmisc
An R Package for Extended Behavior Genetics Analysis
| adjustKidsPerCouple | Generate or Adjust Number of Kids per Couple Based on Mating... |
| allGens | allGens A function to calculate the number of individuals in... |
| ASOIAF | A song of ice and fire pedigree data |
| assignCoupleIds | Assign Couple IDs |
| assignParentIDs | Assign momID and dadID based on family mapping |
| BGmisc-package | BGmisc: An R Package for Extended Behavior Genetics Analysis |
| buildBetweenGenerations | Process Generation Connections |
| buildWithinGenerations | Process Generations for Pedigree Simulation |
| calculateH | Falconer's Formula |
| calculateRelatedness | Calculate Relatedness Coefficient |
| calculateSummaryDT | This function calculates summary statistics for all numeric... |
| checkIDs | Validates and Optionally Repairs Unique IDs in a Pedigree... |
| checkPedigreeNetwork | Validate Pedigree Network Structure |
| checkSex | Validates and Optionally Repairs Sex Coding in a Pedigree... |
| com2links | Convert Sparse Relationship Matrices to Kinship Links |
| combine_columns | Combine Columns |
| comp2vech | comp2vech Turn a variance component relatedness matrix into... |
| compute_parent_adjacency | Compute Parent Adjacency Matrix with Multiple Approaches |
| countPatternRows | Check for Pattern Rows |
| createFamilyToParentsMapping | Create a mapping of family IDs to parent IDs |
| createGenDataFrame | Create Data Frame for Generation |
| determineSex | Determine Sex of Offspring |
| dot-computeTranspose | Compute the transpose multiplication for the relatedness... |
| dropLink | dropLink A function to drop a person from his/her parents in... |
| efunc | Error Function |
| evenInsert | evenInsert A function to insert m elements evenly into a... |
| extract_info | Extract Information from Line |
| extractSummaryText | Extract Summary Text |
| famSizeCal | famSizeCal A function to calculate the total number of... |
| findFounder | This function finds the originating member for each line in a... |
| fitComponentModel | fitComponentModel Fit the estimated variance components of a... |
| hazard | Simulated pedigree with two extended families and an... |
| identifyComponentModel | identifyComponentModel Determine if a variance components... |
| inbreeding | Artificial pedigree data on eight families with inbreeding |
| inferRelatedness | Infer Relatedness Coefficient |
| makeInbreeding | makeInbreeding A function to create inbred mates in the... |
| makeLongTree | Make Long Tree |
| makeTwins | makeTwins A function to impute twins in the simulated... |
| markPotentialChildren | Mark and Assign children |
| matchMembers | Match Members |
| Null | Compute the null space of a matrix |
| nullToNA | nullToNA |
| parseRelationships | infer relationship from tree template |
| parseTree | Parse Tree |
| ped2add | Take a pedigree and turn it into an additive genetics... |
| ped2ce | Take a pedigree and turn it into an extended environmental... |
| ped2cn | Take a pedigree and turn it into a common nuclear... |
| ped2com | Take a pedigree and turn it into a relatedness matrix |
| ped2fam | Segment Pedigree into Extended Families |
| ped2graph | Turn a pedigree into a graph |
| ped2maternal | Add a maternal line ID variable to a pedigree |
| ped2mit | Take a pedigree and turn it into a mitochondrial relatedness... |
| ped2paternal | Add a paternal line ID variable to a pedigree |
| plotPedigree | plotPedigree A wrapped function to plot simulated pedigree... |
| potter | Fictional pedigree data on a wizarding family |
| processParents | Process parents information |
| readGedcom | Read a GEDCOM File |
| readWikifamilytree | Read Wiki Family Tree |
| recodeSex | Recodes Sex Variable in a Pedigree Dataframe |
| related_coef | related_coef (Deprecated) |
| relatedness | relatedness (Deprecated) |
| repairIDs | Repair Missing IDs |
| repairSex | Repairs Sex Coding in a Pedigree Dataframe |
| resample | Resample Elements of a Vector |
| rmvn | rmvn |
| royal92 | Royal pedigree data from 1992 |
| SimPed | SimPed (Deprecated) |
| simulatePedigree | Simulate Pedigrees This function simulates "balanced"... |
| sizeAllGens | sizeAllGens An internal supporting function for... |
| standardizeColnames | Standardize Column Names in a Dataframe (Internal) |
| summarizeFamilies | Summarize the families in a pedigree |
| summarizeMatrilines | Summarize the maternal lines in a pedigree |
| summarizePatrilines | Summarize the paternal lines in a pedigree |
| summarizePedigrees | Summarize Pedigree Data |
| try_na | modified tryCatch function |
| vech | vech Create the half-vectorization of a matrix |
