dot-adjIndexed: Construct Adjacency Matrix for Parent-Child Relationships...
In BGmisc: An R Package for Extended Behavior Genetics Analysis

.adjIndexed

R Documentation

Construct Adjacency Matrix for Parent-Child Relationships Using Indexed Method

Description

Construct Adjacency Matrix for Parent-Child Relationships Using Indexed Method

Usage

.adjIndexed(
  ped,
  component,
  saveable,
  resume,
  save_path,
  verbose,
  lastComputed,
  checkpoint_files,
  update_rate,
  parList,
  lens,
  save_rate_parlist,
  config
)

Arguments

`ped`	a pedigree dataset. Needs ID, momID, and dadID columns
`component`	character. Which component of the pedigree to return. See Details.
`saveable`	logical. If TRUE, save the intermediate results to disk
`resume`	logical. If TRUE, resume from a checkpoint
`save_path`	character. The path to save the checkpoint files
`verbose`	logical. If TRUE, print progress through stages of algorithm
`lastComputed`	the last computed index
`checkpoint_files`	a list of checkpoint files
`update_rate`	numeric. The rate at which to print progress
`parList`	a list of parent-child relationships
`lens`	a vector of the lengths of the parent-child relationships
`save_rate_parlist`	numeric. The rate at which to save the intermediate results by parent list. If NULL, defaults to save_rate*1000
`config`	a configuration list that passes parameters to the function