API for BIGr
Breeding Insight Genomics Functions for Polyploid and Diploid Species
| Global functions | |
|---|---|
| QPsolve | Source code |
| add_ref_alt | Source code |
| allele_freq_poly | Man page Source code |
| calculate_Het | Man page Source code |
| calculate_MAF | Man page Source code |
| check_botloci | Source code |
| check_homozygous_trios | Man page Source code |
| check_ped | Man page Source code |
| check_replicates | Man page Source code |
| compare | Source code |
| convert_to_dosage | Source code |
| create_VCF_body | Source code |
| dosage2vcf | Man page Source code |
| dosage_ratios | Man page Source code |
| filterMADC | Man page Source code |
| filterVCF | Man page Source code |
| flip_dosage | Man page Source code |
| get_counts | Source code |
| get_countsMADC | Man page Source code |
| get_ref_alt_hap_seq | Source code |
| imputation_concordance | Man page Source code |
| loop_though_dartag_report | Source code |
| madc2gmat | Man page Source code |
| madc2vcf_all | Man page Source code |
| madc2vcf_targets | Man page Source code |
| merge_MADCs | Man page Source code |
| merge_counts | Source code |
| solve_composition_poly | Man page Source code |
| thinSNP | Man page Source code |
| updog2vcf | Man page Source code |
